gff3_to_paths

This function creates a features path file from a GFF file

internal

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Juan Antonio Garcia-Martin

Rgff

R Utilities for GFF Files

Juan Carlos Oliveros

Rafael Torres-Perez

gff3_to_paths function

<dl><dt>gffFile</dt>
<dd>Path to the input GFF file</dd>
<dt>outFile</dt>
<dd>Path to the output features path file, if not provided the output will be gffFile.paths</dd>
<dt>forceOverwrite</dt>
<dd>If output file exists, overwrite the existing file. (default FALSE)</dd></dl>

Arguments

Creates a features path file from a GFF file — gff3_to_paths

<dl>

<dt>gffFile</dt>
<dd>Path to the input GFF file</dd>


<dt>outFile</dt>
<dd>Path to the output features path file, if not provided the output will be gffFile.paths</dd>


<dt>forceOverwrite</dt>
<dd>If output file exists, overwrite the existing file. (default FALSE)</dd>

</dl>

gff3_to_paths: Creates a features path file from a GFF file

Description

Usage

Value

Arguments