gff_stats_by_chr

This function summarizes the number of features of each type in each chromosome
of a GFF file and returns the statistics

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Juan Antonio Garcia-Martin

Rgff

R Utilities for GFF Files

Juan Carlos Oliveros

Rafael Torres-Perez

gff_stats_by_chr function

<dl><dt>inFile</dt>
<dd>Path to the input GFF file</dd></dl>

Arguments

Summarizes the number of elements of each type in each chromosome of a GFF file — gff_stats_by_chr

<dl>

<dt>inFile</dt>
<dd>Path to the input GFF file</dd>

</dl>

gff_stats_by_chr: Summarizes the number of elements of each type in each chromosome of a GFF file

Description

Usage

Value

Arguments

Examples