saf_from_paths

This function creates a SAF file from a features path file for the given blocks
and features

internal

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Juan Antonio Garcia-Martin

Rgff

R Utilities for GFF Files

Juan Carlos Oliveros

Rafael Torres-Perez

saf_from_paths function

<dl><dt>pathsFile</dt>
<dd>Path to the input features path file</dd>
<dt>groupBy</dt>
<dd>Vector of features to group by in feature count</dd>
<dt>block</dt>
<dd>Vector of features to be used as block in feature count</dd></dl>

Arguments

Generates SAF formatted data from a features path file for the given blocks and features — saf_from_paths

<dl>

<dt>pathsFile</dt>
<dd>Path to the input features path file</dd>


<dt>groupBy</dt>
<dd>Vector of features to group by in feature count</dd>


<dt>block</dt>
<dd>Vector of features to be used as block in feature count</dd>

</dl>

saf_from_paths: Generates SAF formatted data from a features path file for the given blocks and features

Description

Usage

Value

Arguments