<p>g2d is a list with two data.frames based on the following  4 publications
(GS2D, Fontaine (2016) &lt;doi:10.18547/gcb.2016.vol2.iss1.e33&gt;,
DisGeNET, Pinero (2016) &lt;doi:10.1093/nar/gkw943&gt;,
Berto2016, Berto (2016) &lt;doi:10.3389/fgene.2016.00031&gt; and
PsyGeNET, Sacristan (2015) &lt;doi:10.1093/bioinformatics/btv301&gt;).
Those lists were combined and manually curated to have matching disease names.
The first list, clean, contains the curated data, the list complete contains complete data. In the former disease names might not match.</p>

datasets

It provides a list of genes associated to diseases (g2d$clean and g2d$complete) based on the following  4 publications (GS2D, Fontaine (2016) <doi:10.18547/gcb.2016.vol2.iss1.e33>, DisGeNET, Pinero (2016) <doi:10.1093/nar/gkw943> Berto2016, Berto (2016) <doi:10.3389/fgene.2016.00031> and  PsyGeNET, Sacristan (2015) <doi:10.1093/bioinformatics/btv301>). Those lists were combined and manually curated to have matching disease names.  When provided a list of gene names, it calculates the disease enrichment of the gene set. The enrichment is calculated using proportion test and Fisher's exact test. Adjusted fdr p-values are returned alongside with p-values combined using the Fisher's method.

g2d: g2d

Description

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