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Risa (version 1.14.0)

getAnnotatedDataFrameAssay: Retrieves an AnnotatedDataFrameAssay.

Description

Retrieves an AnnotatedDataFrameAssay.

Usage

getAnnotatedDataFrameAssay(isa, assay.filename)

Arguments

isa
An object of the ISAtab-class.
assay.filename

Value

An annotated data frame.

See Also

ISATab-class, AnnotatedDataFrame

Examples

Run this code
 faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
 faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE)
 faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]])
 str(faahkoADF)
 
 
 armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
 armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE)
 armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]])
 str(armstrongADF)

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