getAssayRawDataFilenames

getAssayRawDataFilenames-methods

getAssayRawDataFilenames,AssayTab,logical-method

getAssayRawDataFilenames,MicroarrayAssayTab,logical-method

getAssayRawDataFilenames,MSAssayTab,logical-method

getAssayRawDataFilenames,NMRAssayTab,logical-method

getAssayRawDataFilenames,SeqAssayTab,logical-method


 ~~ Methods for function <code>getAssayRawDataFilenames</code> in package <span class="pkg">Risa</span> ~~
They retrieve the raw data files for a particular assay type.


methods

raw data filenames

The Investigation / Study / Assay (ISA) tab-delimited
format is a general purpose framework with which to collect and communicate
complex metadata (i.e. sample characteristics, technologies used, type
of measurements made) from experiments employing a combination of
technologies, spanning from traditional approaches to high-throughput
techniques. Risa allows to access metadata/data in ISA-Tab format and
build Bioconductor data structures. Currently, data generated from microarray,
flow cytometry and metabolomics-based (i.e. mass spectrometry) assays are supported.
The package is extendable and efforts are undergoing to support metadata associated to proteomics assays.

Alejandra GonzalezBeltran

Risa

Converting experimental metadata from ISA-tab into Bioconductor data structures

getAssayRawDataFilenames-methods function

<dl> <dt><code>signature(.Object = "AssayTab", full.path = "logical")</code></dt><dd>
Retrieves the raw data filenames for a generic assay.
</dd> <dt><code>signature(.Object = "MicroarrayAssayTab", full.path = "logical")</code></dt><dd>
Retrieves the raw data filenames for an assay whose technology type is DNA microarray.
</dd> <dt><code>signature(.Object = "MSAssayTab", full.path = "logical")</code></dt><dd>
Retrieves the raw data filenames for an assay whose technology type is mass spectrometry. These data filenames correspond to those specified in the column 'Raw Spectral Data File'.
</dd> <dt><code>signature(.Object = "NMRAssayTab", full.path = "logical")</code></dt><dd>
Retrieves the raw data filenames for an assay whose technology type is NMR spectroscopy.
</dd> <dt><code>signature(.Object = "SeqAssayTab", full.path = "logical")</code></dt><dd>
Retrieves the raw data filenames for an assay whose technology type is nucleotide sequencing.
</dd> </dl>

Methods

~~ Methods for function <code>getAssayRawDataFilenames</code> in package <pkg>Risa</pkg> ~~
They retrieve the raw data files for a particular assay type.

~~ Methods for Function <code>getAssayRawDataFilenames</code> in Package <pkg>Risa</pkg> ~~

 ~~ Methods for Function <code>getAssayRawDataFilenames</code> in Package <span class="pkg">Risa</span> ~~

getAssayRawDataFilenames-methods: Methods for Function `getAssayRawDataFilenames` in Package Risa

Description

Arguments

Methods