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Rlabkey (version 2.2.2)

Data Exchange Between R and 'LabKey' Server

Description

The 'LabKey' client library for R makes it easy for R users to load live data from a 'LabKey' Server, , into the R environment for analysis, provided users have permissions to read the data. It also enables R users to insert, update, and delete records stored on a 'LabKey' Server, provided they have appropriate permissions to do so.

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Version

Install

install.packages('Rlabkey')

Monthly Downloads

964

Version

2.2.2

License

Apache License 2.0

Maintainer

Cory Nathe

Last Published

July 12th, 2018

Functions in Rlabkey (2.2.2)

Rlabkey-package

Exchange data between LabKey Server and R

labkey.makeRemotePath

Build a file path to data on a remote machine

labkey.getLookupDetails

Retrieve detailed information on a LabKey query

labkey.getQueryDetails

Retrieve detailed information on a LabKey query

labkey.setDefaults

Set the default parameters used for all http or https requests

labkey.getQueries

Retrieve a list of available queries for a specified LabKey schema

List the projects available at a given LabKey Server address

List the available schemas

labkey.getQueryViews

Retrieve a list of available named views defined on a query in a schema

labkey.setDebugMode

Helper function to enable/disable debug mode.

labkey.saveBatch

Save an assay batch object to a labkey database

labkey.rstudio.saveReport

Update RStudio report source back to LabKey

labkey.importRows

Import rows of data into a LabKey Server

labkey.getSchemas

Retrieve a list of available schemas from a labkey database

Builds filters to be used in labkey.selectRows and getRows

labkey.selectRows

Retrieve data from a labkey database

Returns an object representing a LabKey schema

labkey.rstudio.initReport

Initialize a RStudio session for LabKey R report source editing

labkey.executeSql

Retrieve data from a LabKey Server using SQL commands

labkey.rstudio.isInitialized

Check valid rlabkey session

labkey.setCurlOptions

Modify the current set of Curl options that are being used in the existing session

labkey.updateRows

Update existing rows of data in a labkey database

List the available folder paths

labkey.curlOptions

Returns the current set of Curl options that are being used in the existing session

Returns the folder path associated with a session

labkey.acceptSelfSignedCerts

Convenience method to configure Rlabkey connections to accept self-signed certificates

Retrieve data from LabKey Server

Creates and returns a LabKey Server session

Get related data fields that are available to include in a query on a given query object

Returns an object representing a LabKey schema

labkey.deleteRows

Delete rows of data from a LabKey database

RlabkeyUsersGuide

Open the Rlabkey Users Guide

labkey.getDefaultViewDetails

Retrieve the fields of a LabKey query view

labkey.getFolders

Retrieve a list of folders accessible to the current user

labkey.domain.save

Updates an existing LabKey domain

labkey.domain.create

Create a new LabKey domain

labkey.domain.get

Returns the metadata for an existing LabKey domain

labkey.domain.createDesign

Helper function to create a domain design data structure

labkey.domain.drop

Delete a LabKey domain

labkey.insertRows

Insert new rows of data into a LabKey Server

labkey.domain.createAndLoad

Create a new LabKey domain and load data

labkey.domain.inferFields

Infer field metadata from a data frame