Rlabkey v2.2.2
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Data Exchange Between R and 'LabKey' Server
The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <http://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Functions in Rlabkey
| Name | Description | |
| Rlabkey-package | Exchange data between LabKey Server and R | |
| labkey.makeRemotePath | Build a file path to data on a remote machine | |
| labkey.getLookupDetails | Retrieve detailed information on a LabKey query | |
| labkey.getQueryDetails | Retrieve detailed information on a LabKey query | |
| labkey.setDefaults | Set the default parameters used for all http or https requests | |
| labkey.getQueries | Retrieve a list of available queries for a specified LabKey schema | |
| lsProjects | List the projects available at a given LabKey Server address | |
| lsSchemas | List the available schemas | |
| labkey.getQueryViews | Retrieve a list of available named views defined on a query in a schema | |
| labkey.setDebugMode | Helper function to enable/disable debug mode. | |
| labkey.saveBatch | Save an assay batch object to a labkey database | |
| labkey.rstudio.saveReport | Update RStudio report source back to LabKey | |
| labkey.importRows | Import rows of data into a LabKey Server | |
| labkey.getSchemas | Retrieve a list of available schemas from a labkey database | |
| makeFilter | Builds filters to be used in labkey.selectRows and getRows | |
| labkey.selectRows | Retrieve data from a labkey database | |
| saveResults | Returns an object representing a LabKey schema | |
| labkey.rstudio.initReport | Initialize a RStudio session for LabKey R report source editing | |
| labkey.executeSql | Retrieve data from a LabKey Server using SQL commands | |
| labkey.rstudio.isInitialized | Check valid rlabkey session | |
| labkey.setCurlOptions | Modify the current set of Curl options that are being used in the existing session | |
| labkey.updateRows | Update existing rows of data in a labkey database | |
| lsFolders | List the available folder paths | |
| labkey.curlOptions | Returns the current set of Curl options that are being used in the existing session | |
| getFolderPath | Returns the folder path associated with a session | |
| labkey.acceptSelfSignedCerts | Convenience method to configure Rlabkey connections to accept self-signed certificates | |
| getRows | Retrieve data from LabKey Server | |
| getSession | Creates and returns a LabKey Server session | |
| getLookups | Get related data fields that are available to include in a query on a given query object | |
| getSchema | Returns an object representing a LabKey schema | |
| labkey.deleteRows | Delete rows of data from a LabKey database | |
| RlabkeyUsersGuide | Open the Rlabkey Users Guide | |
| labkey.getDefaultViewDetails | Retrieve the fields of a LabKey query view | |
| labkey.getFolders | Retrieve a list of folders accessible to the current user | |
| labkey.domain.save | Updates an existing LabKey domain | |
| labkey.domain.create | Create a new LabKey domain | |
| labkey.domain.get | Returns the metadata for an existing LabKey domain | |
| labkey.domain.createDesign | Helper function to create a domain design data structure | |
| labkey.domain.drop | Delete a LabKey domain | |
| labkey.insertRows | Insert new rows of data into a LabKey Server | |
| labkey.domain.createAndLoad | Create a new LabKey domain and load data | |
| labkey.domain.inferFields | Infer field metadata from a data frame | |
| No Results! | ||
Vignettes of Rlabkey
| Name | ||
| RlabkeyExample.Rnw | ||
| No Results! | ||
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Details
| Date | 2018-06-14 |
| License | Apache License 2.0 |
| Copyright | Copyright (c) 2010-2018 LabKey Corporation |
| LazyLoad | true |
| LinkingTo | Rcpp |
| NeedsCompilation | yes |
| Packaged | 2018-07-05 19:41:46 UTC; Cory |
| Repository | CRAN |
| Date/Publication | 2018-07-12 20:20:02 UTC |
| depends | httr , jsonlite |
| imports | Rcpp (>= 0.11.0) |
| Contributors | Peter Hussey |
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