Rlabkey v2.2.4

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by Cory Nathe View Source

Data Exchange Between R and 'LabKey' Server

The 'LabKey' client library for R makes it easy for R users to load live data from a 'LabKey' Server, <http://www.labkey.com/>, into the R environment for analysis, provided users have permissions to read the data. It also enables R users to insert, update, and delete records stored on a 'LabKey' Server, provided they have appropriate permissions to do so.

Functions in Rlabkey

Name	Description
getSchema	Returns an object representing a LabKey schema
labkey.rstudio.isInitialized	Check valid rlabkey session
labkey.rstudio.saveReport	Update RStudio report source back to LabKey
labkey.domain.save	Updates an existing LabKey domain
labkey.getDefaultViewDetails	Retrieve the fields of a LabKey query view
labkey.getFolders	Retrieve a list of folders accessible to the current user
labkey.domain.create	Create a new LabKey domain
labkey.domain.createAndLoad	Create a new LabKey domain and load data
labkey.domain.get	Returns the metadata for an existing LabKey domain
labkey.experiment.SAMPLE_DERIVATION_PROTOCOL	Constant for the Simple Derivation Protocol
labkey.setCurlOptions	Modify the current set of Curl options that are being used in the existing session
labkey.experiment.createMaterial	Create an experiment material object
labkey.experiment.createData	Create an experiment data object
labkey.executeSql	Retrieve data from a LabKey Server using SQL commands
labkey.domain.inferFields	Infer field metadata from a data frame
labkey.experiment.saveBatch	Saves a modified experiment batch
labkey.getBaseUrl	Get the default baseUrl parameter used for all http or https requests
labkey.getQueries	Retrieve a list of available queries for a specified LabKey schema
labkey.domain.createDesign	Helper function to create a domain design data structure
labkey.getQueryDetails	Retrieve detailed information on a LabKey query
labkey.rstudio.initReport	Initialize a RStudio session for LabKey R report source editing
labkey.setDebugMode	Helper function to enable/disable debug mode.
labkey.getLookupDetails	Retrieve detailed information on a LabKey query
labkey.experiment.createRun	Create an experiment run object
labkey.getQueryViews	Retrieve a list of available named views defined on a query in a schema
makeFilter	Builds filters to be used in labkey.selectRows and getRows
labkey.rstudio.initSession	Initialize a RStudio session for LabKey integration using a time one request id
labkey.setDefaults	Set the default parameters used for all http or https requests
labkey.domain.drop	Delete a LabKey domain
labkey.updateRows	Update existing rows of data in a labkey database
lsFolders	List the available folder paths
labkey.setModuleProperty	Set module property value
saveResults	Returns an object representing a LabKey schema
labkey.importRows	Import rows of data into a LabKey Server
labkey.getSchemas	Retrieve a list of available schemas from a labkey database
labkey.insertRows	Insert new rows of data into a LabKey Server
labkey.getModuleProperty	Get effective module property value
labkey.transform.getRunPropertyValue	Assay transform script helper function to get a run property value from a data.frame
labkey.transform.readRunPropertiesFile	Assay transform script helper function to read a run properties file
labkey.makeRemotePath	Build a file path to data on a remote machine
lsProjects	List the projects available at a given LabKey Server address
labkey.rstudio.initRStudio	Initialize a RStudio session for LabKey integration
labkey.saveBatch	Save an assay batch object to a labkey database
labkey.selectRows	Retrieve data from a labkey database
lsSchemas	List the available schemas
getFolderPath	Returns the folder path associated with a session
getLookups	Get related data fields that are available to include in a query on a given query object
labkey.curlOptions	Returns the current set of Curl options that are being used in the existing session
labkey.acceptSelfSignedCerts	Convenience method to configure Rlabkey connections to accept self-signed certificates
getSession	Creates and returns a LabKey Server session
labkey.deleteRows	Delete rows of data from a LabKey database
getRows	Retrieve data from LabKey Server
RlabkeyUsersGuide	Open the Rlabkey Users Guide
Rlabkey-package	Exchange data between LabKey Server and R
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Vignettes of Rlabkey

Name
RlabkeyExample.Rnw
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Details

Date	2018-11-02
License	Apache License 2.0
Copyright	Copyright (c) 2010-2018 LabKey Corporation
LazyLoad	true
LinkingTo	Rcpp
NeedsCompilation	yes
Packaged	2018-11-02 18:41:26 UTC; Cory
Repository	CRAN
Date/Publication	2018-11-05 19:20:14 UTC

depends	httr , jsonlite
imports	Rcpp (>= 0.11.0)
Contributors	Peter Hussey