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Harmonizing data (achieving or improving inferential equivalence of data collected by separate studies) can be required in epidemiological research but is methodologically and technically challenging. Data collected by separate studies are typically heterogenous, and decisions on if and how to process data must be made, executed accurately, and documented in a transparent manner. Rmonize is an R package developed by Maelstrom Research to address some of the key challenges in this process and facilitate streamlined, reusable, and well documented harmonization pipelines.

Get an overview of processing with Rmonize and links to resources available for each step on the Process page.

For a quick start to using the package, see the vignettes Install your working environment and a Simple example of data processing with Rmonize.

The Glossary provides information about package terminology, and the Functions page provides technical documentation on package functions and built-in materials.

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Version

Install

install.packages('Rmonize')

Monthly Downloads

193

Version

2.0.0

License

GPL-3

Issues

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Stars

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Maintainer

Guillaume Fabre

Last Published

June 30th, 2025

Functions in Rmonize (2.0.0)

harmonized_dossier_summarize

Generate an assessment report and summary of a harmonized dossier
data_dict_apply

Objects exported from other packages
data_dict_evaluate

Objects exported from other packages
dossier_create

Objects exported from other packages
harmo_process

Generate harmonized dataset(s) and associated metadata
dataset_summarize

Objects exported from other packages
dataset_evaluate

Objects exported from other packages
dataset_visualize

Objects exported from other packages
as_harmonized_dossier

Validate and coerce as a harmonized dossier object
dossier_evaluate

Objects exported from other packages
bookdown_open

Objects exported from other packages
dataschema_extract

Generate a DataSchema based on Data Processing Elements
dataschema_evaluate

Generate an assessment report for a DataSchema
harmonized_dossier_evaluate

Generate an assessment report for a harmonized dossier
harmonized_dossier_visualize

Generate a web-based visual report for a harmonized dossier
pooled_harmonized_dataset_create

Generate a pooled harmonized dataset from a harmonized dossier
is_dataschema_mlstr

Test for a valid DataSchema object with specific format restrictions
dossier_summarize

Objects exported from other packages
data_proc_elem_evaluate

Generate an assessment report for Data Processing Elements
data_dict_extract

Objects exported from other packages
reexports

Objects exported from other packages
is_dataschema

Test for a valid DataSchema object
is_data_proc_elem

Test for a valid Data Processing Elements object
show_harmo_error

Print a summary of data processing in the console
Rmonize-package

Rmonize: Tools for Data Harmonization
as_dataschema_mlstr

Validate and coerce as a DataSchema object with specific format restrictions
as_dataschema

Validate and coerce as a DataSchema object
as_data_proc_elem

Validate and coerce as a Data Processing Elements object
Rmonize_examples

Example objects to provide an illustrative use case
as_data_dict

Objects exported from other packages
as_dossier

Objects exported from other packages
as_dataset

Objects exported from other packages
Rmonize_templates

Call to online documentation to download templates
Rmonize_website

Call to package website