RnBClusterRun-class


A class for configuring and running RnBeads on a scientific compute cluster.


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

RnBClusterRun-class function

 <dl>
  <dt><code>architecture</code></dt><dd>A <code>ClusterArchitecture</code> object managing the settings for a scientific compute cluster</dd> <dt><code>modules</code></dt><dd>A vector of pipeline modules</dd> <dt><code>module.res.req</code></dt><dd>Stores the resource requirements for each module. A list containing named vectors for the resources</dd> <dt><code>module.num.cores</code></dt><dd>Stores the number of cores for each module</dd> </dl> 

Slots

 <dl>
  <dt><code><a rd-options="" href="/link/setModuleResourceRequirements%2CRnBClusterRun%2Ccharacter%2Ccharacter-method?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::setModuleResourceRequirements,RnBClusterRun,character,character-method">setModuleResourceRequirements,RnBClusterRun,character,character-method</a></code></dt><dd>Sets the resource requirements for the different pipeline modules</dd> <dt><code><a rd-options="" href="/link/setModuleNumCores%2CRnBClusterRun%2Cinteger%2Ccharacter-method?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::setModuleNumCores,RnBClusterRun,integer,character-method">setModuleNumCores,RnBClusterRun,integer,character-method</a></code></dt><dd>Sets the number of cores used by the different pipeline modules</dd> <dt><code><a rd-options="" href="/link/getModuleNumCores%2CRnBClusterRun-method?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::getModuleNumCores,RnBClusterRun-method">getModuleNumCores,RnBClusterRun-method</a></code></dt><dd>Gets the number of cores used by the different pipeline modules</dd> <dt><code><a rd-options="" href="/link/run%2CRnBClusterRun-method?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::run,RnBClusterRun-method">run,RnBClusterRun-method</a></code></dt><dd>Submit the pipeline modules to the cluster</dd> </dl> 

Methods

A class for configuring and running RnBeads on a scientific compute cluster.

RnBClusterRun-class: RnBClusterRun Class

Description

Arguments

Slots

Methods