Wrapper function RnBeadSet
RnBeadSet(pheno, probes, betas, p.values = NULL, bead.counts = NULL, qc = NULL, platform = "450k", summarize.regions = TRUE, region.types = rnb.region.types.for.analysis("hg19"), useff = rnb.getOption("disk.dump.big.matrices"))character vector of Infinium(R) probe identifiersmatrix or ff_matrix of beta values. If probes are missing should contain Infinium probe identifiers as row names.matrix or ff_matrix of detection p-values.character singleton specifying the microarray platform: "450k" corresponds to HumanMethylation450 microarray, and "27k" stands for HumanMethylation27.character vector specifying the region types, for which the methylation infromation will be summarized.TRUE the data matrices will be stored as ff objectspval.sitesmatrix of detection p-values with the same dimensions as betas, or
NULL if the detection p-values are not available.pval.regionslist of methylation matrix objects, one per available region type. Every row in a
matrix corresponds to a methylation site, and every column - to a sample.covg.sitesmatrix of bead counts per probe with the same dimensions as betas, or
NULL if this data are not available.qclist of two elements - "Cy3" and
"Cy5", storing intensities of probes on the green and red channels, respectively. This slot's value is
NULL if no control probe information is available.samplesphenomethmatrix of methylation beta-values of the dataset.dpvalmatrix of detection p-values of the dataset.covgmatrix of bead counts of the dataset.qcremove.sitesremove.samplescombineRnBeadSet:
rnb.execute.import for more details.
read.geo for details.
MethyLumiSet