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RnBeads (version 1.4.0)

auto.select.rank.cut: auto.select.rank.cut

Description

automatically select a rank cutoff for given ranks and p-values current implementation: sort the p-values according to rank. select as rank cutoff the rank for which the worst (i.e. max) p-value in the top list is still smaller than the best (i.e. min) p-value of the group of worst-ranking p-values of equal size as the top-list

Usage

auto.select.rank.cut(p, r, alpha = 0.1)

Arguments

p
vector of p-values
r
vector of ranks
alpha
the percentile to select the top and bottom part of the list

Value

the maximum rank fulfilling the criterion