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RnBeads (version 1.4.0)

getSubCmdTokens,ClusterArchitecture-method: getSubCmdTokens-methods

Description

Returns a string for the of command line corresponding to submitting a job with the given command to the cluster.

Usage

"getSubCmdTokens"(object, cmd.tokens, log, job.name = "", res.req = character(0), depend.jobs = character(0))

Arguments

object
ClusterArchitecture object
cmd.tokens
a character vector specifying the executable command that should be wrapped in the cluster submission command
log
file name and path of the log file that the submitted job writes to
job.name
name of the submitted job
res.req
character vector specifying required resources. The resource requirements should be the values of the vector, the names should specify the resource name
depend.jobs
character vector containg names or ids of jobs the submitted job will depend on.

Value

A character vector containing the submission command tokens

Details

For a concrete child class implementation for a sun grid architecture specification see getSubCmdTokens,ClusterArchitectureSGE-method