initialize,RnBDiffMeth-method: initialize.RnBDiffMeth
Description
Initialize an RnBDiffMeth object
Usage
"initialize"(.Object, site.test.method = rnb.getOption("differential.site.test.method"), covg.thres = rnb.getOption("filtering.coverage.threshold"), disk.dump = FALSE, disk.path = NULL)
Arguments
.Object
New instance of RnBDiffMeth.
site.test.method
method which was applied to obtain the site-level p-values.
covg.thres
coverage threshold. Important for certain columns of the differential methylation tables.
See computeDiffMeth.bin.site and computeDiffMeth.bin.region for details.
disk.dump
Flag indicating whether the tables should be stored on disk rather than in the main memory
disk.path
Path on the disk for DMTs.Only meaningful if disk.dump is TRUE