load.region.subsegment.annotation

The <code>RnBSet object</code> with subsegments specified in the regions

rnb.set

a directory to load the annotation from. (binary <code>RData</code> format.)

annotation.dir


For the region annotation of a given <code>RnBSet</code> object. Subdivide each region into subsegments by
hierarchical clustering on the site distances in a particular region and then splitting the region into subregions consisting
of these site clusters. The number of clusters is determined in such way that the mean number of sites per cluster
is given by the <code>ns</code> parameter.


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

load.region.subsegment.annotation function

For the region annotation of a given <code>RnBSet</code> object. Subdivide each region into subsegments by
hierarchical clustering on the site distances in a particular region and then splitting the region into subregions consisting
of these site clusters. The number of clusters is determined in such way that the mean number of sites per cluster
is given by the <code>ns</code> parameter.

load.region.subsegment.annotation: load.region.subsegment.annotation

Description

Usage

Arguments

Value