RnBeads (version 1.4.0)

rnb.execute.filter.summary: rnb.execute.filter.summary

Description

Calculates a table summarizing the effect of the applied filtering procedures.

Usage

rnb.execute.filter.summary(old.set, new.set)

Arguments

old.set

Methylation dataset before filtering as an object of type inheriting RnBSet.

new.set

Methylation dataset after filtering as an object of type inheriting RnBSet.

Value

matrix summarizing the number of removed and retained sites, samples, and (optionally) reliable and unreliable measurements.

Details

This function expects that the sites and samples in new.set are subsets of the sites and samples in old.set, respectively. If this is not the case, it exists with an error.

See Also

rnb.run.preprocessing for running the whole preprocessing module