RnBeads (version 1.4.0)

rnb.execute.high.coverage.removal: rnb.execute.high.coverage.removal

Description

Removes methylation sites with a coverage larger than 100 times the 95-percentile of coverage in each sample.

Usage

rnb.execute.high.coverage.removal(rnb.set)

Arguments

rnb.set

Methylation dataset as an object of type inheriting RnBiseqSet.

Value

list of two elements:

"dataset"

The (possibly) modified dataset after retaining sites on autosomes only.

"filtered"

integer vector storing the indices of all removed sites.