rnb.plot.biseq.coverage.hist

rnbs.set

unique sample identifier. In case <code>rnb.getOption("identifiers.column")</code> 
is not <code>NULL</code>, <code>sample</code> should attain values from the corresponding column, 
or <code>colnames(meth(rnb.set))</code> otherwise

sample

<code>character</code> singleton. If <code>site</code> the coverage
information is plotted for each methylation site. Otherwise
should be one of the regions returned by <code>rnb.region.types</code>

type

a flag specifying whether the output should be saved as <code>ReportPlot</code>

writeToFile

if <code>TRUE</code> and <code>writeToFile</code> is <code>TRUE</code>substitute the plot options in the plot file name with digits

numeric.names

the maximum percentile of the coverage to be plotted

covg.max.percentile

other arguments to <code><a rd-options="" href="/link/createReportPlot?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::createReportPlot">createReportPlot</a></code>

RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

rnb.plot.biseq.coverage.hist function

a flag specifying whether the output should be saved as <code><linkS4class>ReportPlot</linkS4class></code>

other arguments to <code><a href="createReportPlot" rd-options="">createReportPlot</a></code>

rnb.plot.biseq.coverage.hist: rnb.plot.biseq.coverage.hist

Description

Usage

Arguments

Value