rnb.plot.biseq.coverage.violin

rnbs.set

unique sample identifiers. In case <code>rnb.getOption("identifiers.column")</code> 
is not <code>NULL</code>, <code>samples</code> should attain values from the corresponding column, 
or <code>colnames(meth(rnb.set))</code> otherwise

samples

base filename for the files to be plotted. If NULL, the plot will not be written to file

fname

<code>character</code> singleton. If <code>site</code> the coverage
information is plotted for each methylation site. Otherwise
should be one of the regions returned by <code>rnb.region.types</code>

type

Vector of length 2 specifying the range of coverage to be plotted. if <code>NULL</code> (default) the entire range will be plotted

covg.range

other arguments to <code><a rd-options="" href="/link/createReportPlot?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::createReportPlot">createReportPlot</a></code>


Plots the violin plots of the coverage distribution


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

rnb.plot.biseq.coverage.violin function

other arguments to <code><a href="createReportPlot" rd-options="">createReportPlot</a></code>

Plots the violin plots of the coverage distribution

rnb.plot.biseq.coverage.violin: rnb.plot.biseq.coverage.violin

Description

Usage

Arguments

Value