RnBeads (version 1.4.0)

rnb.plot.negative.boxplot: rnb.plot.negative.boxplot

Description

Box plots of negative control probes

Usage

rnb.plot.negative.boxplot(rnb.set, sample.subset = 1:length(samples(rnb.set)), writeToFile = FALSE, name.prefix = NULL, ...)

Arguments

rnb.set

RnBeadSet object with valid quality control information

sample.subset

an integer vector specifying the subset of samples for which the plotting should be performed

writeToFile

flag specifying whether the output should be saved as ReportPlot

name.prefix

in case writeToFile is TRUE, a character singleton specifying a prefix to the variable part of the image file names

...

other arguments to createReportPlot

Value

plot as an object of type ReportPlot if writeToFile is TRUE and of class ggplot otherwise.

Examples

library(RnBeads.hg19)
data(small.example.object)
rnb.plot.negative.boxplot(rnb.set.example)