RnBeads (version 1.4.0)

rnb.plot.region.site.density: rnb.plot.region.site.density

Description

Plots the density of sites accross the specified region type

Usage

rnb.plot.region.site.density(rnb.set, region.type, extend.by = 0.33)

Arguments

rnb.set

RnBSet object

region.type

Region type for which the plot should be generated

extend.by

A number between 0 and 1 specifying the percentage by which a region is extended in order to capture methylation information before region start and after region end

Value

a ggplot2 object for plotting the plot shows the density of sites accross the specified region type for all regions of that type from 0 (region start) to 1 (region end). Sites in the flanking areas are also shown (coordinates <0 and="">1).

Examples

library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.plot.region.site.density(rnb.set.example,"genes")