RnBeads (version 1.4.0)

rnb.region.types.for.analysis: rnb.region.types.for.analysis

Description

Identifies the region types that are summarized by the given dataset and pointed to for analysis.

Usage

rnb.region.types.for.analysis(rnb.set)

Arguments

rnb.set

Methylation dataset as an object of type inheriting RnBSet.

Value

List of all region types to be analyzed in the current dataset in the form of a character vector.

Details

This function intersects the value of the analysis option "region.types" with the region types that are summarized in the provided dataset. In case the option's value is NULL, this function returns all summarized region types in rnb.set.

See Also

rnb.getOption for checking the value of the "region.types" option; summarized.regions for obtaining the region types summarized in a dataset

Examples

library(RnBeads.hg19)
data(small.example.object)
"promoters" %in% rnb.region.types.for.analysis(rnb.set.example)