rnb.set.annotation.and.cpg.stats

Parameters handled exactly as in <code><a rd-options="" href="/link/rnb.set.annotation?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::rnb.set.annotation">rnb.set.annotation</a></code>

type, description, assembly

a data.frame handled similarly as by <code><a rd-options="" href="/link/rnb.set.annotation?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::rnb.set.annotation">rnb.set.annotation</a></code> with the exception that
the genomic location columns should be specified using upper case first letters

regions


wrapper for <code><a rd-options="" href="/link/rnb.set.annotation?package=RnBeads&version=1.4.0" data-mini-rdoc="RnBeads::rnb.set.annotation">rnb.set.annotation</a></code> to accept the region format as output by <code>annotation(rnb.set)</code>.
Additionally, CpG statistics are added to the annotation.


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

rnb.set.annotation.and.cpg.stats function

Parameters handled exactly as in <code><a href="rnb.set.annotation" rd-options="">rnb.set.annotation</a></code>

a data.frame handled similarly as by <code><a href="rnb.set.annotation" rd-options="">rnb.set.annotation</a></code> with the exception that
the genomic location columns should be specified using upper case first letters

wrapper for <code><a href="rnb.set.annotation" rd-options="">rnb.set.annotation</a></code> to accept the region format as output by <code>annotation(rnb.set)</code>.
Additionally, CpG statistics are added to the annotation.

rnb.set.annotation.and.cpg.stats: rnb.set.annotation.and.cpg.stats

Description

Usage

Arguments

Value

See Also