Maturity_parameters

Maturity parameters used for the checks: check_smallest_mature, check_spawning_period and check_sex_inversion

datasets

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

Maturity_parameters function

A data frame with 64 observations on the following 12 variables.<dl>
 <dt><code>Species</code></dt>
<dd>a factor with levels the rubincodes of the species for which the information is known.</dd> <dt><code>SEX</code></dt>
<dd>a factor with levels <code>C</code> <code>F</code> <code>M</code></dd> <dt><code>min_L50</code></dt>
<dd>a numeric vector</dd> <dt><code>max_L50</code></dt>
<dd>a numeric vector</dd> <dt><code>smallest_mature_individual_observed</code></dt>
<dd>a numeric vector</dd> <dt><code>min_length_SEX_INVERSION</code></dt>
<dd>a numeric vector</dd> <dt><code>max_length_SEX_INVERSION</code></dt>
<dd>a numeric vector</dd> <dt><code>Type_of_hermaphroditism</code></dt>
<dd>a factor with levels <code></code> <code>proterandrous</code> <code>protogynous</code></dd> <dt><code>Area</code></dt>
<dd>a factor with levels as the area of the relevant information</dd> <dt><code>Start_reproductive_season</code></dt>
<dd>a numeric vector</dd> <dt><code>End_reproductive_season</code></dt>
<dd>a numeric vector</dd> <dt><code>Reference</code></dt>
<dd>a factor with levels of the bibliographic references</dd> 
</dl>

Format

Author

Maturity parameters — Maturity_parameters

A data frame with 64 observations on the following 12 variables.<dl>
 <dt><code>Species</code></dt>
<dd>a factor with levels the rubincodes of the species for which the information is known.</dd>

 <dt><code>SEX</code></dt>
<dd>a factor with levels <code>C</code> <code>F</code> <code>M</code></dd>

 <dt><code>min_L50</code></dt>
<dd>a numeric vector</dd>

 <dt><code>max_L50</code></dt>
<dd>a numeric vector</dd>

 <dt><code>smallest_mature_individual_observed</code></dt>
<dd>a numeric vector</dd>

 <dt><code>min_length_SEX_INVERSION</code></dt>
<dd>a numeric vector</dd>

 <dt><code>max_length_SEX_INVERSION</code></dt>
<dd>a numeric vector</dd>

 <dt><code>Type_of_hermaphroditism</code></dt>
<dd>a factor with levels <code></code> <code>proterandrous</code> <code>protogynous</code></dd>

 <dt><code>Area</code></dt>
<dd>a factor with levels as the area of the relevant information</dd>

 <dt><code>Start_reproductive_season</code></dt>
<dd>a numeric vector</dd>

 <dt><code>End_reproductive_season</code></dt>
<dd>a numeric vector</dd>

 <dt><code>Reference</code></dt>
<dd>a factor with levels of the bibliographic references</dd>

 
</dl>

Maturity_parameters: Maturity parameters

Description

Usage

Arguments

Format

Author

Examples