check_nbtotTB

The function checks that the total number of individuals is consistent with the sum of the individuals per sex

 error 

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

check_nbtotTB function

<dl> <dt>DataTB</dt>
<dd>Catch data table according to MEDITS protocol (TB)</dd> <dt>year</dt>
<dd>reference year for the analysis</dd> <dt>wd</dt>
<dd>working directory path defined by the user</dd> <dt>suffix</dt>
<dd>Suffix string of the Logfile</dd></dl>

Arguments

Author

Check total number of individuals in TB — check_nbtotTB

<dl>

 <dt>DataTB</dt>
<dd>Catch data table according to MEDITS protocol (TB)</dd>

 <dt>year</dt>
<dd>reference year for the analysis</dd>

 <dt>wd</dt>
<dd>working directory path defined by the user</dd>

 <dt>suffix</dt>
<dd>Suffix string of the Logfile</dd>

</dl>

check_nbtotTB: Check total number of individuals in TB

Description

Usage

Value

Arguments

Author

Details

References

Examples