create_catch

This function report the information contained in the biological data table (TB) from the MEDITS protocol to the format required by R-sufi (Rochet et al., 2004).

R-sufi

Rcapt

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

create_catch function

<dl><dt>ResultDataTB</dt>
<dd>Catch data table according to MEDITS protocol (TB)</dd><dt>year</dt>
<dd>reference year for the analysis</dd><dt>wd</dt>
<dd>working directory path defined by the user</dd><dt>save</dt>
<dd>boolean value to save the results in a csv file</dd></dl>

Arguments

Author

Function to create the R-sufi file capt. — create_catch

<dl>

<dt>ResultDataTB</dt>
<dd>Catch data table according to MEDITS protocol (TB)</dd>

<dt>year</dt>
<dd>reference year for the analysis</dd>

<dt>wd</dt>
<dd>working directory path defined by the user</dd>

<dt>save</dt>
<dd>boolean value to save the results in a csv file</dd>

</dl>

create_catch: Function to create the R-sufi file capt.

Description

Usage

Value

Arguments

Author

References

Examples