error.table

Function generating the error summary table.

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

error.table function

<dl> <dt>check.df</dt>
<dd>data frame of the checks</dd> <dt>check_without_errors</dt>
<dd>boolean variable reporting if errors were detected</dd> <dt>check_without_warnings</dt>
<dd>boolean variable reporting if warnings were detected</dd> <dt>checkName</dt>
<dd>string of the check name</dd> <dt>table</dt>
<dd>reference table checked by the function</dd> <dt>Field</dt>
<dd>field checked by check dictionary</dd> <dt>yea</dt>
<dd>reference year</dd></dl>

Arguments

Author

Summary table of the errors — error.table

<dl>

 <dt>check.df</dt>
<dd>data frame of the checks</dd>

 <dt>check_without_errors</dt>
<dd>boolean variable reporting if errors were detected</dd>

 <dt>check_without_warnings</dt>
<dd>boolean variable reporting if warnings were detected</dd>

 <dt>checkName</dt>
<dd>string of the check name</dd>

 <dt>table</dt>
<dd>reference table checked by the function</dd>

 <dt>Field</dt>
<dd>field checked by check dictionary</dd>

 <dt>yea</dt>
<dd>reference year</dd>

</dl>

error.table: Summary table of the errors

Description

Usage

Value

Arguments

Author

Details

References