printError

Management of the error in logfile.

error

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

printError function

<dl><dt>funname</dt>
<dd>name of the check function.</dd><dt>check_without_errors</dt>
<dd>TRUE if there is no error, FALSE if there is any error.</dd><dt>stop_</dt>
<dd>TRUE if the 'RoME' function has to stop, FALSE if the run should continue</dd></dl>

Arguments

Author

Management of the error in logfile. — printError

<dl>

<dt>funname</dt>
<dd>name of the check function.</dd>

<dt>check_without_errors</dt>
<dd>TRUE if there is no error, FALSE if there is any error.</dd>

<dt>stop_</dt>
<dd>TRUE if the 'RoME' function has to stop, FALSE if the run should continue</dd>

</dl>

printError: Management of the error in logfile.

Description

Usage

Value

Arguments

Author

References

Examples