templateTB

Dataframe containing the headers of TB, according to the MEDITS manual.

datasets

Provides quality checks for MEDITS (International Bottom Trawl Survey in the Mediterranean) trawl survey exchange data tables (TA (Haul data), TB (Catch data), TC (Biological data), TE (Biological individual data), TL (Litter data)). The main function RoME() calls all check functions in a defined sequence to perform a complete quality control of TX (Generic exchange data) data, including header validation, controlled-vocabulary checks, cross-table consistency tests, and biological plausibility checks. No automatic correction is applied: the package detects errors, warns the user, and specifies the type of error to ease data correction. Checks can be run simultaneously on multi-year datasets. An embedded 'shiny' application is also provided via run_RoME_app(). References describing the methods: MEDITS Working Group (2017).

Walter Zupa

RoME

Multiple Checks on MEDITS Trawl Survey Data

Isabella Bitetto

Maria Teresa Spedicato

Loredana Casciaro

Cosmidano Neglia

templateTB function

A data frame with 0 observations on the following 43 variables.<dl>
 <dt><code>TYPE_OF_FILE</code></dt>
<dd>a logical vector</dd> <dt><code>COUNTRY</code></dt>
<dd>a logical vector</dd> <dt><code>AREA</code></dt>
<dd>a logical vector</dd> <dt><code>VESSEL</code></dt>
<dd>a logical vector</dd> <dt><code>YEAR</code></dt>
<dd>a logical vector</dd> <dt><code>MONTH</code></dt>
<dd>a logical vector</dd> <dt><code>DAY</code></dt>
<dd>a logical vector</dd> <dt><code>HAUL_NUMBER</code></dt>
<dd>a logical vector</dd> <dt><code>CODEND_CLOSING</code></dt>
<dd>a logical vector</dd> <dt><code>PART_OF_THE_CODEND</code></dt>
<dd>a logical vector</dd> <dt><code>FAUNISTIC_CATEGORY</code></dt>
<dd>a logical vector</dd> <dt><code>GENUS</code></dt>
<dd>a logical vector</dd> <dt><code>SPECIES</code></dt>
<dd>a logical vector</dd> <dt><code>NAME_OF_THE_REFERENCE_LIST</code></dt>
<dd>a logical vector</dd> <dt><code>TOTAL_WEIGHT_IN_THE_HAUL</code></dt>
<dd>a logical vector</dd> <dt><code>TOTAL_NUMBER_IN_THE_HAUL</code></dt>
<dd>a logical vector</dd> <dt><code>NB_OF_FEMALES</code></dt>
<dd>a logical vector</dd> <dt><code>NB_OF_MALES</code></dt>
<dd>a logical vector</dd> <dt><code>NB_OF_UNDETERMINED</code></dt>
<dd>a logical vector</dd> 
</dl>

Format

Author

Template catch data table (TB). — templateTB

A data frame with 0 observations on the following 43 variables.<dl>
 <dt><code>TYPE_OF_FILE</code></dt>
<dd>a logical vector</dd>

 <dt><code>COUNTRY</code></dt>
<dd>a logical vector</dd>

 <dt><code>AREA</code></dt>
<dd>a logical vector</dd>

 <dt><code>VESSEL</code></dt>
<dd>a logical vector</dd>

 <dt><code>YEAR</code></dt>
<dd>a logical vector</dd>

 <dt><code>MONTH</code></dt>
<dd>a logical vector</dd>

 <dt><code>DAY</code></dt>
<dd>a logical vector</dd>

 <dt><code>HAUL_NUMBER</code></dt>
<dd>a logical vector</dd>

 <dt><code>CODEND_CLOSING</code></dt>
<dd>a logical vector</dd>

 <dt><code>PART_OF_THE_CODEND</code></dt>
<dd>a logical vector</dd>

 <dt><code>FAUNISTIC_CATEGORY</code></dt>
<dd>a logical vector</dd>

 <dt><code>GENUS</code></dt>
<dd>a logical vector</dd>

 <dt><code>SPECIES</code></dt>
<dd>a logical vector</dd>

 <dt><code>NAME_OF_THE_REFERENCE_LIST</code></dt>
<dd>a logical vector</dd>

 <dt><code>TOTAL_WEIGHT_IN_THE_HAUL</code></dt>
<dd>a logical vector</dd>

 <dt><code>TOTAL_NUMBER_IN_THE_HAUL</code></dt>
<dd>a logical vector</dd>

 <dt><code>NB_OF_FEMALES</code></dt>
<dd>a logical vector</dd>

 <dt><code>NB_OF_MALES</code></dt>
<dd>a logical vector</dd>

 <dt><code>NB_OF_UNDETERMINED</code></dt>
<dd>a logical vector</dd>

 
</dl>

templateTB: Template catch data table (TB).

Description

Usage

Arguments

Format

Author

Details

References

Examples