RobRSVD (version 1.0)

RobRSVD-package: The Robust Regularized Singular Value Decomposition Package

Description

This package provides the function to calculate SVD, regularized SVD, robust SVD and robust regularized SVD method. The robust SVD methods use alternating iteratively reweighted least squares methods. The regularized SVD uses generalized cross validation to choose the optimal smoothing parameters.

Details

Package:

RobRSVD

Type:

Package

Version:

1.0

Date:

2013-12-15

License:

GPL

The most important function in this package is RobRSVD

References

Zhang, L., Shen, H., & Huang, J. Z. (2013). Robust regularized singular value decomposition with application to mortality data. The Annals of Applied Statistics, 7(3), 1540-1561.

See Also

See also in svd3dplot

Examples

#generate a simulated data set, which is provided in Zhang et al (2013) AoAS paper.
u0<-log(10/9)*10^seq(0, 1, length=100)
v0<-sin(2*pi*seq(0, 1, length=100))/(1+1/pi)
s0<-773
data0<-s0*u0 %*% t(v0)
data<-data0+matrix(rnorm(10000, sd=20), nrow=100)
data[ceiling(10000*runif(50))]<-max(data0)+max(data0)*runif(50)
#the above provides random outlying cell simulation

#the svd calculation
data.svd<-RobRSVD(data, irobust=FALSE, uspar=0, vspar=0)

#the robsvd calculation
data.robsvd<-RobRSVD(data, irobust=TRUE, uspar=0, vspar=0)

#the ssvd calculation
data.ssvd<-RobRSVD(data, irobust=FALSE, iugcv=TRUE, ivgcv=TRUE)

#the robrsvd calculation
data.robrsvd<-RobRSVD(data, irobust=TRUE, iugcv=TRUE, ivgcv=TRUE)

#compare v's
plot(data.svd$v, type='l', ylab='V')
lines(data.robrsvd$v, col=2)
lines(data.ssvd$v, col=6)
lines(data.robsvd$v, col=4)

#compare u's
plot(data.svd$u, type='l', ylab='U')
lines(data.robrsvd$u, col=2)
lines(data.ssvd$u, col=6)
lines(data.robsvd$u, col=4)

#compare approximation matrices
#app.svd=data.svd$s * data.svd$u %*% t(data.svd$v)
#app.ssvd=data.ssvd$s * data.ssvd$u %*% t(data.ssvd$v)
#app.robsvd=data.robsvd$s * data.robsvd$u %*% t(data.robsvd$v)
#app.robrsvd=data.robrsvd$s * data.robrsvd$u %*% t(data.robrsvd$v)

#par(mfrow=c(2, 2))
#persp(app.svd, main='SVD', theta=-45, phi=40, xlab='', ylab='', zlab='')
#persp(app.ssvd, main='Regularized SVD', theta=-45, phi=40, xlab='', ylab='', zlab='');
#persp(app.robsvd, main='Robust SVD', theta=-45, phi=40, xlab='', ylab='', zlab='');
#persp(app.robrsvd, main='RobRSVD', theta=-45, phi=40, xlab='', ylab='', zlab='');
#dev.off()