combineStatsWithDL

<code>combineStatsWithDL</code> - This function goes through a set of image
directories and combines all existing statistics_withDepthLayers.csv-files
into one data frame, that is optionally saved as a csv.

Minirhizotrons are widely used to observe and explore roots and
their growth. This package provides the means to stitch images and
divide them into depth layers.
Please note that this R package was developed alongside the following
manuscript:
Stitching root scans and extracting depth layer information -- a workflow
and practical examples, S. Kersting, L. Knüver, and M. Fischer.
The manuscript is currently in preparation and should be citet as soon as
it is available.
This project was supported by the project ArtIGROW, which is a part of the
WIR!-Alliance ArtIFARM –  Artificial Intelligence in Farming funded by the
German Federal Ministry of Research, Technology and Space (No. 03WIR4805).

Sophie Kersting

RootscanR

Stitching and Analyzing Root Scans

Linda Knüver

Mareike Fischer

combineStatsWithDL function

<dl><dt>data_dir</dt>
<dd>(Optional, default = NULL) String specifying the name
(full path) of the directory containing all image directories of
interest.</dd>
<dt>data_dirs</dt>
<dd>(Optional, default = NULL) Character vector specifying all
of the individual root scan directories of interest. This is only used if
<code>data_dir</code> is set to NULL.</dd>
<dt>out_file</dt>
<dd>(Optional, default = NA) Full path of the output-csv-file.
If set to NULL, no output file is created. If its is set to NA and
<code>data_dir</code> is not NULL, then the output file
all_statistics_withDepthLayers.csv is created in <code>data_dir</code>.</dd></dl>

Arguments

Get an overview of the given root scans — combineStatsWithDL

<dl>

<dt>data_dir</dt>
<dd>(Optional, default = NULL) String specifying the name
(full path) of the directory containing all image directories of
interest.</dd>


<dt>data_dirs</dt>
<dd>(Optional, default = NULL) Character vector specifying all
of the individual root scan directories of interest. This is only used if
<code>data_dir</code> is set to NULL.</dd>


<dt>out_file</dt>
<dd>(Optional, default = NA) Full path of the output-csv-file.
If set to NULL, no output file is created. If its is set to NA and
<code>data_dir</code> is not NULL, then the output file
all_statistics_withDepthLayers.csv is created in <code>data_dir</code>.</dd>

</dl>

combineStatsWithDL: Get an overview of the given root scans

Description

Usage

Value

Arguments

Examples