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Rpdb (version 2.1)
Read, write, visualize and manipulate PDB files
Description
Provides tools to read, write, visualize PDB files and perform some structural manipulations.
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Version
Version
2.3.4
2.2
2.1
2.0
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Install
install.packages('Rpdb')
Monthly Downloads
234
Version
2.1
License
GPL
Maintainer
Julien Idé
Last Published
March 26th, 2014
Functions in Rpdb (2.1)
Search functions
read.pdb
PDB File Reader
mirror
Reflexion of Atomic Coordinates
range.coords
Range of Atomic Coordinates
translation
Translation of Atomic Coordinates
elements
Periodic Table of the Elements
vectorialOperations
Basic Vectorial Operations
coords
The Atomic Coordinates of an Object
unsplit
Reassemble Groups
split.pdb
Divide and Reassemble
pdb
Objects
xyz2abc
From Cartesian to Fractional Coordinates and Vis Versa
bond-angle-dihedral
Atomic Bond Lengths, Angles and Dihedrals
atoms
Create
atoms
Object
natom
Number of Atoms in an Object Containing Atomic Coordinates
pdb
Create an Object of Class
pdb
cellProperties
Properties of a Unit Cell
centres
Centres-of-Geometry and Centres-of-Mass
masses
Mass of Chemical Elements
rotation
Rotation of Atomic Coordinates
rotationHelpers
Helper Functions for Rotation of Atomic Coordinates
addAxes
Add Axes or PBC Box to the
rgl
Scene
addLabels
Add Labels to the
rgl
Scene
subset.pdb
Subsetting
atoms
and
pdb
Objects
inertia
Moment of Inertia of a Molecular System
translationHelpers
Helper Functions for Translation of Atomic Coordinates
mirrorHelpers
Helper Functions for reflection of Atomic Coordinates
Rpdb-package
Read, Write, Visualize and Manipulate PDB Files
viewAxis
Set the View of the
rgl
Scene
write.pdb
PDB File Writer
toSymbols
Atomic Symbols Converter
merge.coords
Merging Molecular Systems
basis
The Basis of an Object
universalConstants
universal Constants
reindex
Reinitialize Object Indexing
visualize
Visualize a Molecular Structure
cryst1
Create
cryst1
Object
conect
Create
conect
Object
wrap
Wrap Atomic Coordinates
replicate
Replicate Atomic Coordinates