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Rphylip (version 0.1-21)

Rphylip: An R interface for PHYLIP

Description

Rphylip provides an R interface for the PHYLIP package. All users of Rphylip will thus first have to install the PHYLIP phylogeny methods program package (Felsenstein 2013). See http://evolution.genetics.washington.edu/phylip.html for more information about installing PHYLIP.

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Version

Install

install.packages('Rphylip')

Monthly Downloads

11

Version

0.1-21

License

GPL (>= 2)

Maintainer

Liam Revell

Last Published

March 11th, 2014

Functions in Rphylip (0.1-21)

R interface for dnacomp

R interface for treedist

Print method protein sequences, phylip.data, or rest.data object

Rphylip-package

Rphylip: An R interface for PHYLIP

R interface for dnapars

Converts objects to protein sequences, phylip.data, or rest.data object

R interface for threshml

R interface for protpars

Parameter optimizer for Rdnaml

R interface for pars

R interface for restdist

R interface for kitsch

R interface for fitch

R interface for dollop

R interface for clique

R interfaces for dnadist

R interface for contrast

R interface for gendist

R interface for contml

R interface for dnainvar

R interfaces for proml and promlk

R interface for neighbor

R interface for mix

R interfaces for dnaml and dnamlk

R interface for penny

R interface for dolpenny

R interface for dnapenny

R interface for restml

R interface for consense

Set path to the folder containing PHYLIP executables for the current R session

Reads protein sequences from file in multiple formats

Help set up PHYLIP in Mac OS X

Example datasets

R interfaces for protdist