RpsiXML (version 2.10.0)

psimi25Source-class: Class "psimi25Source"

Description

A class representing data source compatible with PSI-MI 2.5 XML data exchange format

Arguments

Objects from the Class

Objects can be created by calls of the form new("psimi25Source", ...)

Slots

label:
Object of class "character", a meaningful unique label of the database, does not necessarily have to be the identifier used in the PSI-MI files. The value is advised to be overwritten by the objects
sourceDb:
Object of class "character", the character string used in the PSI-MI files to identify the source database. The value must be overwritten by the object, depending on the database identifier used in the PSI-MI file.
uniprotSymbol:
Object of class "character", the identifier of UniProf reference in "primaryRef" or "secondaryRef" attributes of the interactors, telling the parser where to find UniProt symbol of the interactors. The value must be overwritten by the objects.

Methods

sourceDb
signature(x = "psimi25Source"): returns the source database
uniprot
signature(x = "psimi25Source"): returns the uniprot identifier of the PSI-MI 2.5 XML file

See Also

parsePsimi25Interaction, parsePsimi25Complex, psimi25XML2Graph

Examples

Run this code
showClass("psimi25Source")

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