RpsiXML (version 2.12.0)

interactorInfo: Interactor info in a matrix

Description

The function returns the essential information of interactors in a matrix. Xrefs are left out since they have arbitrary numbers of annotation and cannot be summarized into a matrix.

Usage

interactorInfo(x)

Arguments

x
An object which contains psimi25Interactor information, for example objects of psimi25InteractionEntry-class, psimi25Graph-class, psimi25Hypergraph-class or psimi25ComplexEntry-class

Value

A matrix of interactor information, each row represents an interactor The columns are
sourceDb
source database
sourceId
source database index
shortLabel
short label assigned by the source database
uniprotId
UniProt ID, NA if not available
organismName
the organism of the interactor protein

See Also

xref, availableXrefs

Examples

Run this code
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

hprdxml <- file.path(xmlDir, "hprd_200709_test.xml")
hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

hprdInteractorInfo <- interactorInfo(hprdSet)

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