Rqc (version 1.6.2)

rqcCycleAverageQualityCalc: Per cycle average quality by files

Description

This function plots line graph of per cycle average quality.

Usage

rqcCycleAverageQualityCalc(rqcResultSet)
rqcCycleAverageQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

ggplot2 object

Functions

• rqcCycleAverageQualityCalc: calculates necessary statistics

See Also

rqcGroupCycleAverageQualityPlot plots cycle-specific quality by groups

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleAverageQualityPlot(rqcResultSet)