Rqc (version 1.6.2)

rqcCycleGCCalc: Per cycle percentual GC plot

Description

Creates a line graph of per cycle percentual GC.

Usage

rqcCycleGCCalc(rqcResultSet)
rqcCycleGCPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

• rqcCycleGCCalc: calculates necessary statistics

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleGCPlot(rqcResultSet)