Rqc (version 1.6.2)

rqcCycleQualityBoxCalc: Per cycle quality box plot

Description

Plots per cycle quality box plot.

Usage

rqcCycleQualityBoxCalc(rqcResultSet)
rqcCycleQualityBoxPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

• rqcCycleQualityBoxCalc: calculates necessary statistics

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleQualityBoxPlot(rqcResultSet)