Rqc (version 1.6.2)

rqcCycleQualityCalc: Per cycle quality plot

Description

Creates a graph of per cycle quality.

Usage

rqcCycleQualityCalc(rqcResultSet)
rqcCycleQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

• rqcCycleQualityCalc: calculates necessary statistics

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, workers=1)
}, keep="rqcResultSet")
rqcCycleQualityPlot(rqcResultSet)