Rqc (version 1.6.2)

rqcGroupCycleAverageQualityCalc: Per group average quality across cycles

Description

This function plots cycle-specific quality by groups

Usage

rqcGroupCycleAverageQualityCalc(rqcResultSet)
rqcGroupCycleAverageQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

ggplot2 object

Functions

• rqcGroupCycleAverageQualityCalc: calculates necessary statistics

See Also

rqcCycleAverageQualityPlot plots cycle-specific quality by files

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcGroupCycleAverageQualityPlot(rqcResultSet)