Rqc (version 1.6.2)

rqcReadQualityBoxCalc: Per read mean quality box plot

Description

This function creates crate a graphic charts with box plots describing per read mean quality distribution for each input file

Usage

rqcReadQualityBoxCalc(rqcResultSet)
rqcReadQualityBoxPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

• rqcReadQualityBoxCalc: calculates necessary statistics

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcReadQualityBoxPlot(rqcResultSet)