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Rsampletrees (version 0.1)

Rsampletrees-package: Pre and Post-Processing of sampletrees output

Description

Contains functions that are useful for pre- and post-processing the tree output from the MCMC-based C++ program sampletrees.

Arguments

Details

Package:
Rsampletrees
Type:
Package
Version:
0.1
Date:
2014/08/01
License:
GPL-2

Use the pre-processing functions to create and write settings values to a file.

After running sampletrees, use post-processing functions to read the sampletrees output (acceptance rates, mutation and recombination rates, trees) into R in order to summarize the results.

Future versions will have a sampletrees function that calls the C++ code directly.

References

TBD