polytope_iso

<p>a data matrix of size s x e whose rows are vertices of a tropical polytope.</p>

<p>a vector of a point in row spaces of <code>D</code>.</p>

internal

points

Column

space

polytope

space.

tropical

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.

Houjie Wang

Rtropical

Data Analysis Tools over Space of Phylogenetic Trees Using
Tropical Geometry

Kaizhang Wang

Grady Weyenberg

Xiaoxian Tang

Ruriko Yoshida

polytope_iso function

Dimension Reduction by Isometry — polytope_iso

Dimension Reduction by Isometry

polytope_iso: Dimension Reduction by Isometry

Description

Usage

Arguments

Value