read.tree.to.data.matrix

A file containing trees in Newick form in a category.

data.file1

A file containing trees in Newick form in an assumed different category.

data.file2

Read Newick-formatted trees in two categories into a data matrix

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.

Houjie Wang

Rtropical

read.tree.to.data.matrix: Read Newick-formatted trees in two categories into a data matrix

Description

Usage

Arguments

Value