sim_trees

datasets

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.

Houjie Wang

Rtropical

Data Analysis Tools over Space of Phylogenetic Trees Using
Tropical Geometry

Kaizhang Wang

Grady Weyenberg

Xiaoxian Tang

Ruriko Yoshida

sim_trees function

<p>An ape <code>multiPhylo</code> object with 300 rooted trees on 5 tips.</p>

Format

Simulated Tree Data — sim_trees

Simulated Tree Data

sim_trees: Simulated Tree Data

Description

Usage

Arguments

Format