This function translates the model to C code, if needed
rxTrans(model, cFile = sprintf("%s.c", gsub("[.][^.]*$", "", model)),
extraC = NULL, modelPrefix = "", md5 = "", modName = NULL,
modVars = FALSE, calcSens = NULL, calcJac = NULL,
collapseModel = FALSE, ...)# S3 method for default
rxTrans(model, cFile = sprintf("%s.c", gsub("[.][^.]*$",
"", model)), extraC = NULL, modelPrefix = "", md5 = "",
modName = NULL, modVars = FALSE, calcSens = NULL, calcJac = NULL,
collapseModel = FALSE, ...)
# S3 method for character
rxTrans(model, cFile = sprintf("%s.c", gsub("[.][^.]*$",
"", model)), extraC = NULL, modelPrefix = "", md5 = "",
modName = NULL, modVars = FALSE, calcSens = NULL, calcJac = NULL,
collapseModel = FALSE, ...)
This is the ODE model specification. It can be:
a string containing the set of ordinary differential equations (ODE) and other expressions defining the changes in the dynamic system.
a file name where the ODE system equation is contained
An ODE expression enclosed in {}
(see also the filename argument). For
details, see the sections “Details” and
“RxODE Syntax” below.
The C file where the code should be output
Extra c code to include in the model. This can be
useful to specify functions in the model. These C functions
should usually take double precision arguments, and
return double precision values.
Prefix of the model functions that will be compiled to make sure that multiple RxODE objects can coexist in the same R session.
Is the md5 of the model before parsing, and is used to
embed the md5 into DLL, and then provide for functions like
rxModelVars.
a string to be used as the model name. This string
is used for naming various aspects of the computations,
including generating C symbol names, dynamic libraries,
etc. Therefore, it is necessary that modName consists of
simple ASCII alphanumeric characters starting with a letter.
returns the model variables instead of the named vector of translated properties.
boolean indicating if RxODE will calculate the sennsitivities according to the specified ODEs.
boolean indicating if RxODE will calculate the Jacobain according to the specified ODEs.
boolean indicating if RxODE will remove all LHS variables when calculating sensitivites.
Ignored parameters.
a named vector of translated model properties
including what type of jacobian is specified, the C function prefixes,
as well as the C functions names to be called through the compiled model.