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SAFARI (version 0.1.0)

rBPS: Reconstructed Binary Pathology Slide

Description

This reconstructed binary image was first represented as a three-class image, prepared using a tumor recognition system (ConvPath) developed by the Quantitative Biomedical Research Center. The original whole-slide image comes from a lung cancer patient in the Lung Screening Study (LSS) subcomponent of NLST. Specifically, this is an image from an H&E-stained slide that was obtained as part of a pathology specimen collection.

Usage

data(rBPS)

Arguments

Format

rBPS is a 314-by-224 binary matrix where each entry corresponds to a tissue or region in the H&E image. In our case the ones and zeros indicate an empty region or tumor tissue, respectively.

References

ConvPath: A software tool for lung adenocarcinoma digital pathological image analysis aided by a convolutional neural network. (2019) EBioMedicine.