Learn R Programming

SANTA (version 2.10.2)

Spatial Analysis of Network Associations

Description

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Copy Link

Version

Version

2.10.2

License

GPL (>= 2)

Maintainer

Alex J Cornish

Last Published

February 15th, 2017

Functions in SANTA (2.10.2)

GraphDiffusion

Compute diffusion kernel-based distance matrix
SANTA.data

Pre-processed dataset for the SANTA vignette
Compactness

Measure the strength of association using compactness scores
BinGraph

Compute a distance bin matrix from a distance matrix
Knode

Rank vertices by their strength of association with high-weight vertices
plot.Knet

Plot the results of the Knet function
DistGraph

Compute the vertex pair distance matrix for a graph
CreateGrid

Generate a grid-like network
GraphMFPT

Compute mean first-passage time-based distance matrix
Knet

Measure the strength of association between a phenotype and a network by computing the strength of hit clustering on the network
SpreadHits

Spread hits across a network in clusters