Check the format and the validity of the parameters which will be used for the analysis with edgeR.
checkParameters.edgeR(projectName, author, targetFile, rawDir, featuresToRemove,
varInt, condRef, batch, alpha, pAdjustMethod, cpmCutoff, gene.selection,
normalizationMethod, colors)name of the project
author of the statistical analysis/report
path to the design/target file
path to the directory containing raw counts files
names of the features to be removed
factor of interest
reference biological condition
blocking factor in the design
threshold of statistical significance
p-value adjustment method: "BH" (default) or "BY" for example
counts-per-million cut-off to filter low counts
selection of the features in MDSPlot
normalization method: "TMM" (default), "RLE" (DESeq) or "upperquartile"
vector of colors of each biological condition on the plots
A boolean indicating if there is a problem in the parameters