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SARTools (version 1.6.2)

exportResults.edgeR: Export results for edgeR analyses

Description

Export counts and edgeR results

Usage

exportResults.edgeR(out.edgeR, group, counts, alpha = 0.05, export = TRUE)

Arguments

out.edgeR

the result of run.edgeR()

group

factor vector of the condition from which each sample belongs

counts

non-filtered counts (used to keep them in the final table)

alpha

threshold to apply to adjusted p-values

export

TRUE to export the results (up, down and complete table) in the tables directory

Value

A list of data.frame containing counts, pvalues, FDR, log2FC...

Details

counts are used as input just in order to export features with null counts too.